I forgot who mentioned it first but someone mentioned that the leading edge of the ventury tunnel has a considerably lower curvature than the rest of the top teams. This can be directly related to the temperature issue that they are wrestling with.
Considering that they had the hardest time of all teams with porposing, it could be a peak into Merc's primary issue(s) which is essentially, their ability to properly model and replicate all the necessary phenomena in that region and it's effects as air propagates past the rest of the tunnel geometry.
It is possible that the changes in air density is influencing the front wing vortex enough to significantly alter the flow structures downstream and wouldn't be surprised if the lower tunnel entrance edge curvature is causing separation or other events that is preventing the vortices from doing its job during different pitch and/or yaw angles, atmospheric changes and so on.
This does sound obvious to a lot of us however, I'm focusing mainly on how a lot of these phenomena to hide or camouflage itself even while analyzing flow viz.